I just watched the first Ninja turtles movie..and theres a Gilligan's Island refrence! More importanly: Gilligan's island relationships!

Casey Jones: Not even close, Zip Neck. Professor and Mary Ann. Happily ever after.
Donatello: No way, Atomic Mouth, Gilligan was her main man. They'd be married and have six kids by now.
Casey Jones: Gilligan was a geek

:)

I think the last time I saw the movie was 1993 or somthing like that. GI seems to have a lot of more movie references than most TV series.

Referenced in The Giant Spider Invasion (http://www.imdb.com/title/tt0073043/) (1975)
Twilight Zone: The Movie (http://www.imdb.com/title/tt0086491/) (1983)
Repo Man (http://www.imdb.com/title/tt0087995/) (1984)
Back to the Beach (http://www.imdb.com/title/tt0092608/) (1987)
The Running Man (http://www.imdb.com/title/tt0093894/) (1987)
Coming to America (http://www.imdb.com/title/tt0094898/) (1988)
Feds (http://www.imdb.com/title/tt0095145/) (1988)
Scrooged (http://www.imdb.com/title/tt0096061/) (1988)
The Colonel's Bequest (http://www.imdb.com/title/tt0363759/) (1989) (VG)
Gleaming the Cube (http://www.imdb.com/title/tt0097438/) (1989)
Heathers (http://www.imdb.com/title/tt0097493/) (1989)
Exile (http://www.imdb.com/title/tt0099526/) (1990) (TV)
Teenage Mutant Ninja Turtles (http://www.imdb.com/title/tt0100758/) (1990)
Monkey Island 2: LeChuck's Revenge (http://www.imdb.com/title/tt0244661/) (1991) (VG)
Critters 3 (http://www.imdb.com/title/tt0101627/) (1991)
The Naked Gun 2½: The Smell of Fear (http://www.imdb.com/title/tt0102510/) (1991)
Ricochet (http://www.imdb.com/title/tt0102789/) (1991)
The Addams Family (http://www.imdb.com/title/tt0101272/) (1991)
Captain Ron (http://www.imdb.com/title/tt0103924/) (1992)
The Man Without a Face (http://www.imdb.com/title/tt0107501/) (1993)
Dazed and Confused (http://www.imdb.com/title/tt0106677/) (1993)
Sister Act 2: Back in the Habit (http://www.imdb.com/title/tt0108147/) (1993)
Little Big League (http://www.imdb.com/title/tt0110363/) (1994)
Exit to Eden (http://www.imdb.com/title/tt0109758/) (1994)
The Brady Bunch Movie (http://www.imdb.com/title/tt0112572/) (1995)
Tommy Boy (http://www.imdb.com/title/tt0114694/) (1995)
Jumanji (http://www.imdb.com/title/tt0113497/) (1995)
'Weird Al' Yankovic: The Videos (http://www.imdb.com/title/tt0168453/) (1996) (V)
Down Periscope (http://www.imdb.com/title/tt0116130/) (1996)
Mystery Science Theater 3000: The Movie (http://www.imdb.com/title/tt0117128/) (1996)
Spy Hard (http://www.imdb.com/title/tt0117723/) (1996)
Multiplicity (http://www.imdb.com/title/tt0117108/) (1996)
A Very Brady Sequel (http://www.imdb.com/title/tt0118073/) (1996)
SubUrbia (http://www.imdb.com/title/tt0120238/) (1996)
Jungle 2 Jungle (http://www.imdb.com/title/tt0119432/) (1997)
The Pest (http://www.imdb.com/title/tt0119887/) (1997)
McHale's Navy (http://www.imdb.com/title/tt0119640/) (1997)
Nothing to Lose (http://www.imdb.com/title/tt0119807/) (1997)
Tinseltown (http://www.imdb.com/title/tt0120095/) (1997)
Wide Awake (http://www.imdb.com/title/tt0120510/) (1998)
Meet the Deedles (http://www.imdb.com/title/tt0120645/) (1998)
The Big Hit (http://www.imdb.com/title/tt0120609/) (1998)
Gilligan's Island: Underneath the Grass Skirt (http://www.imdb.com/title/tt0291951/) (1999) (TV)
The Minus Man (http://www.imdb.com/title/tt0151582/) (1999)
The Blair Witch Project (http://www.imdb.com/title/tt0185937/) (1999)
The Brady Bunch: The E! True Hollywood Story (http://www.imdb.com/title/tt0344957/) (1999) (TV)
Aliens in the Wild, Wild West (http://www.imdb.com/title/tt0250949/) (1999)
Three to Tango (http://www.imdb.com/title/tt0144640/) (1999)
The Longest Journey (http://www.imdb.com/title/tt0219139/) (1999) (VG)
Magnolia (http://www.imdb.com/title/tt0175880/) (1999)
Galaxy Quest (http://www.imdb.com/title/tt0177789/) (1999)
Growing Up Brady (http://www.imdb.com/title/tt0228351/) (2000) (TV)
Gone in Sixty Seconds (http://www.imdb.com/title/tt0187078/) (2000)
The Original Kings of Comedy (http://www.imdb.com/title/tt0236388/) (2000)
100 Girls (http://www.imdb.com/title/tt0214388/) (2000)
Cast Away (http://www.imdb.com/title/tt0162222/) (2000)
American Desi (http://www.imdb.com/title/tt0203289/) (2001)
Swordfish (http://www.imdb.com/title/tt0244244/) (2001)
Rush Hour 2 (http://www.imdb.com/title/tt0266915/) (2001)
American Pie 2 (http://www.imdb.com/title/tt0252866/) (2001)
Jumping Ship (http://www.imdb.com/title/tt0271172/) (2001) (TV)
Linkin Park: Frat Party at the Pankake Festival (http://www.imdb.com/title/tt0387354/) (2001) (V)
Tru Confessions (http://www.imdb.com/title/tt0296251/) (2002) (TV)
Survivin' the Island (http://www.imdb.com/title/tt0354069/) (2002)
The Perfect Pitch (http://www.imdb.com/title/tt0344197/) (2002) (TV)
The Italian Job (http://www.imdb.com/title/tt0317740/) (2003)
Rugrats Go Wild! (http://www.imdb.com/title/tt0337711/) (2003)
The School of Rock (http://www.imdb.com/title/tt0332379/) (2003)
All Access Pass: The TV Land Awards (http://www.imdb.com/title/tt0445921/) (2004) (TV)
Spider-Man 2 (http://www.imdb.com/title/tt0411906/) (2004/II) (VG)
TV Land Convention Special (http://www.imdb.com/title/tt0421257/) (2004) (TV)
VeggieTales: Sumo of the Opera (http://www.imdb.com/title/tt0435507/) (2004) (V)
Aloha, Scooby-Doo (http://www.imdb.com/title/tt0433771/) (2005) (V)
Vampire Bats (http://www.imdb.com/title/tt0473105/) (2005) (TV)


Now that is a lot of references, and I am sure there is a lot more.