ABC has opened up the voting to all viewers for a category called "TV's Most Memorable Moments". While IDOJ has not been nominated, something related has:

In the Drama category, the episode of "Dallas" called "A House Divided" (AKA "Who shot JR?") has been nominated.

In the comedy category, there are lots of favorite moments. The link below takes you to the comedy, but you can navigate to the drama category from there.

http://abc.go.com/primetime/emmys/index?pn=comedyvoting_2008